neobio.jar - NeoBio - Bioinformatics Algorithms in Java

Q

NeoBio is a library of bioinformatics algorithms implemented in Java. The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman and Wunsch (global alignment) and Smith and Waterman (local alignment).

JAR File Size and Download Location:

File name: neobio.jar
File size: 104748 bytes
Date modified: 29-Sep-2003
Download: NeoBio - Bioinformatics Algorithms in Java

Manifest of the JAR:

Main-Class: neobio/gui/NeoBio

✍: .fyicenter.com

A

List of Classes in the JAR:

neobio/gui/AboutDialog
neobio/gui/NeoBio
neobio/gui/PairwiseAlignmentFrame
neobio/textui/NeoBio
neobio/textui/RandomFactorSequenceGenerator
neobio/textui/RandomSequenceGenerator
neobio/alignment/PairwiseAlignmentAlgorithm
neobio/alignment/ScoringScheme
neobio/alignment/IncompatibleScoringSchemeException
neobio/alignment/PairwiseAlignment
neobio/alignment/InvalidSequenceException
neobio/alignment/AlignmentBlock
neobio/alignment/Factor
neobio/alignment/BasicScoringScheme
neobio/alignment/CharSequence
neobio/alignment/CrochemoreLandauZivUkelson
neobio/alignment/FactorSequence
neobio/alignment/Smawk
neobio/alignment/Matrix
neobio/alignment/OutMatrix
neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment
neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment
neobio/alignment/LocalAlignmentBlock
neobio/alignment/InvalidScoringMatrixException
neobio/alignment/NeedlemanWunsch
neobio/alignment/ScoringMatrix
neobio/alignment/SmithWaterman
neobio/alignment/Trie

2011-12-08, ∼5877🔥, 0💬

💬 2016-05-10 venu: testing for my requirement

platform-3.3.0.jar - Java Native Access (JNA)
JNA provides Java programs easy access to native shared libraries (DLLs on Windows) without writing anything but Java code - no JNI or native code is required. This functionality is comparable to Windows' Platform/Invoke and Python's ctypes. Access is dynamic at runtime without code generation. JAR ... 2015-04-23, ∼7137🔥, 0💬

automation-1.11-8.jar - Automaton/Regexp
automaton.jar contains a DFA/NFA (finite-state automata) implementation with Unicode alphabet (UTF16) and support for the standard regular expression operations (concatenation, union, Kleene star) and a number of non-standard ones (intersection, complement, etc.) JAR File Size and Download Location:... 2011-12-06, ∼6845🔥, 0💬

jaxen-1.1.3.jar - Jaxen XPath library
Jaxen is an open source XPath library written in Java. It is adaptable to many different object models, including DOM, XOM, dom4j, and JDOM. Is it also possible to write adapters that treat non-XML trees such as compiled Java byte code or Java beans as XML, thus enabling you to query these trees wit... 2011-12-06, ∼6149🔥, 0💬

jna-3.2.7.jar - Java Native Access (JNA)
JNA provides Java programs easy access to native shared libraries (DLLs on Windows) without writing anything but Java code, no JNI or native code is required. This functionality is comparable to Windows' Platform/Invoke and Python's ctypes. Access is dynamic at runtime without code generation. JAR F... 2015-04-23, ∼6014🔥, 0💬

biojava3-structure-3.0.2.jar - BioJava 3.0 - Structure
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapi... 2011-12-14, ∼6000🔥, 0💬

neobio.jar - NeoBio - Bioinformatics Algorithms in Java
NeoBio is a library of bioinformatics algorithms implemented in Java. The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman and Wunsch (global alignment) and Smith and Waterman (local alignment). JAR File Size a... 2011-12-08, ∼5878🔥, 0💬

nanoxml-2.2.3.jar - NanoXML
NanoXML is a small XML parser for Java. NanoXML comes in three different components: NanoXML/Java - The standard parser for Java; NanoXML/SAX - A SAX adapter for NanoXML/Java; NanoXML/Lite - An extremely small (6KB) XML parser which is the successor of NanoXML 1. JAR File Size and Download Location:... 2011-12-02, ∼5663🔥, 0💬

biojava3-structure-gui-3.0.2.jar - BioJava 3.0 - Structure GUI
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapi... 2011-12-14, ∼5615🔥, 0💬

biojava3-core-3.0.2.jar - BioJava 3.0 - Core
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapi... 2011-12-12, ∼5227🔥, 0💬

All rights in the contents of this web site are reserved by the individual author. FYIcenter.com does not guarantee the truthfulness, accuracy, or reliability of any contents.